PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39878_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 343aa    MW: 38655.7 Da    PI: 8.1487
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39878_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.5e-35251172103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d+++++++sw e  ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF ++
  Cotton_A_39878_BGI-A2_v1.0  25 FLTKTYQLVDDPTTDKIVSWGEYDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFGNE 98 
                                 9*****************************************************************99.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                  Fkkg+k+ll++i+r+k++
  Cotton_A_39878_BGI-A2_v1.0  99 FFKKGEKQLLCEIHRRKTS 117
                                 ****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3617109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3222114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALVLDNCED ILLSLDSHKS VPAPFLTKTY QLVDDPTTDK IVSWGEYDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFGNEFF KKGEKQLLCE IHRRKTSQPQ  120
VAINHHYHSH SPFVNAPSFF PFPSRVSISP AASDEQANWC DSPILSSARV GTGVSVFGGY  180
NSSVTALSED NEKLRRRNNL LTSELAHMTK LYNDIIYFVQ NHVKHVTPSN PYPPNMLLCG  240
SQSAANSSLL QKPLNQFLGY YPNSTKPAQV QFLNTPTAAS KSSLTILEET SSNSCKTKLF  300
GVPLHSKKRL HPEYGATNSE TNKVHLVLEN EDLGLNLMPP STC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222011716123Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486170.0KJ748617.1 Gossypium hirsutum HSF14 (HSF14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482744.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-108HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A075QMF20.0A0A075QMF2_G
STRINGPOPTR_0002s12640.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-110heat shock transcription factor B4